rs30778204 SNP Detail

Summary

• ID
  rs30778204
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136006024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAACA AAACAAAACA
  AAACAAAGCA AAGCAAAGCA AAGCAAAGCA AAGCAAAGCA AAACAAAACA AAACAAAACA
  AAACAAAACA AAAAGAAGAA AAAGAAAAAC CCACAAGACA GTGAAAGTAG TGGAAAGTAA
  GAGAGAAGGG TAGGAGTGGG GAGGTTAATT ATGACTTCAG AACAATGACC AAATCACTAT
  K
  CCTCCTTCCT GAAATCCTTC CATGAACTTG GCTTATCTAG CATGCAAAAC AATACACATA
  AACTAAGCTT TCATTGCTAA CATGTAATAC CCTTCACATG ACCTGAAACT CTCAAAAGAG
  CTTGAAGTTA CATAAGCAAA CTTTCAATTA CTGCTTTGAT AGTGATGTCT TCCAAGAGTT
  TTGCTATGTG CAGATTTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983172	NES10880023	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30778204					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983172	NES10880023	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136006024 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Rr398054	regulatory region 398054	636 bp upstream
Rr585816	regulatory region 585816	658 bp proximal