rs30777901 SNP Detail

Summary

• ID
  rs30777901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTACACA TGTGGGGTTT
  GCAGAGTTTG CCAGTGAAAA CTTACGAAAT TTAAACAGCT TATGAAAATG ACACATAGCA
  CACATTCACG GCTTGAGATT TACTAAAATA AAACATACAG ATTCGCATAT CTGGGAGCAC
  ATTTAATTTT ATTTTTAAAA GAGGCAGTCA TGGCCTCCAG TAAAGGAACT CAACAATATC
  Y
  CATTTCTAAC TGGATCTTGT TTTCACGATG CTGAGAAGCA GTGATATCTT GCTAGTGCCG
  TTGCACTTTC TGGTACCTAC GTACTGTTTA AAACCATTTC CACACACTGG GCCCTGACCA
  GAGTCACTAT CTTCTCATAA TGGTTCAGGA AAGCAAATAT TTAGCCTTAT AAATTCAGGA
  AAGTATTTGA TAATGTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983763	NES10785505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30777901					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983763	NES10785505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381718 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1848 bp downstream
Rr577397	regulatory region 577397	1208 bp distal
Rr577398	regulatory region 577398	817 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29250	transcription start site region 29250	1689 bp downstream
Tssr29251	transcription start site region 29251	1631 bp downstream
Tssr29252	transcription start site region 29252	1610 bp downstream
Tssr29253	transcription start site region 29253	1556 bp downstream
Tssr29254	transcription start site region 29254	1511 bp downstream
Tssr29255	transcription start site region 29255	1491 bp downstream
Tssr29256	transcription start site region 29256	1481 bp downstream
Tssr29257	transcription start site region 29257	1460 bp downstream
Tssr29258	transcription start site region 29258	1214 bp downstream
Tssr29259	transcription start site region 29259	1169 bp downstream
Tssr29260	transcription start site region 29260	1112 bp upstream
Tssr29261	transcription start site region 29261	1632 bp upstream
Tssr29262	transcription start site region 29262	1721 bp upstream