rs30777897 SNP Detail

Summary

• ID
  rs30777897
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAACTT AACAGTCTTT
  CTTTGCAGCA GTCTATGGTT TCTTTGAGTT TTCTAAAATT ATTCCACCAC ACTGAAGTTA
  ACAAACATAA TTTTAGAAAG AACAATGGCG CTCAGGAGCA CAGTTCAGTT ACACATGTGG
  GGTTTGCAGA GTTTGCCAGT GAAAACTTAC GAAATTTAAA CAGCTTATGA AAATGACACA
  K
  AGCACACATT CACGGCTTGA GATTTACTAA AATAAAACAT ACAGATTCGC ATATCTGGGA
  GCACATTTAA TTTTATTTTT AAAAGAGGCA GTCATGGCCT CCAGTAAAGG AACTCAACAA
  TATCTCATTT CTAACTGGAT CTTGTTTTCA CGATGCTGAG AAGCAGTGAT ATCTTGCTAG
  TGCCGTTGCA CTTTCTGGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983759	NES10785503	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30777897					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983759	NES10785503	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381593 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1723 bp downstream
Rr577397	regulatory region 577397	1083 bp distal
Rr577398	regulatory region 577398	692 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1966 bp downstream
Tssr29249	transcription start site region 29249	1939 bp downstream
Tssr29250	transcription start site region 29250	1564 bp downstream
Tssr29251	transcription start site region 29251	1506 bp downstream
Tssr29252	transcription start site region 29252	1485 bp downstream
Tssr29253	transcription start site region 29253	1431 bp downstream
Tssr29254	transcription start site region 29254	1386 bp downstream
Tssr29255	transcription start site region 29255	1366 bp downstream
Tssr29256	transcription start site region 29256	1356 bp downstream
Tssr29257	transcription start site region 29257	1335 bp downstream
Tssr29258	transcription start site region 29258	1089 bp downstream
Tssr29259	transcription start site region 29259	1044 bp downstream
Tssr29260	transcription start site region 29260	1237 bp upstream
Tssr29261	transcription start site region 29261	1757 bp upstream
Tssr29262	transcription start site region 29262	1846 bp upstream