rs30777895 SNP Detail

Summary

• ID
  rs30777895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCAAATT CTAAAATGGC
  GTATGTAAGT CCTAAAAAAA AAGAATCATC CAATTTGGAC AAGTCTGAGA GGCTGACTGT
  CCACATTAAC TATATTTAAC TGTATATTCA AATATAGAAA CTTAACAGTC TTTCTTTGCA
  GCAGTCTATG GTTTCTTTGA GTTTTCTAAA ATTATTCCAC CACACTGAAG TTAACAAACA
  Y
  AATTTTAGAA AGAACAATGG CGCTCAGGAG CACAGTTCAG TTACACATGT GGGGTTTGCA
  GAGTTTGCCA GTGAAAACTT ACGAAATTTA AACAGCTTAT GAAAATGACA CATAGCACAC
  ATTCACGGCT TGAGATTTAC TAAAATAAAA CATACAGATT CGCATATCTG GGAGCACATT
  TAATTTTATT TTTAAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983757	NES10785502	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30777895					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983757	NES10785502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381480 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1610 bp downstream
Rr577397	regulatory region 577397	970 bp distal
Rr577398	regulatory region 577398	579 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1853 bp downstream
Tssr29249	transcription start site region 29249	1826 bp downstream
Tssr29250	transcription start site region 29250	1451 bp downstream
Tssr29251	transcription start site region 29251	1393 bp downstream
Tssr29252	transcription start site region 29252	1372 bp downstream
Tssr29253	transcription start site region 29253	1318 bp downstream
Tssr29254	transcription start site region 29254	1273 bp downstream
Tssr29255	transcription start site region 29255	1253 bp downstream
Tssr29256	transcription start site region 29256	1243 bp downstream
Tssr29257	transcription start site region 29257	1222 bp downstream
Tssr29258	transcription start site region 29258	976 bp downstream
Tssr29259	transcription start site region 29259	931 bp downstream
Tssr29260	transcription start site region 29260	1350 bp upstream
Tssr29261	transcription start site region 29261	1870 bp upstream
Tssr29262	transcription start site region 29262	1959 bp upstream