rs30777543 SNP Detail

Summary

• ID
  rs30777543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60326101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGAGAC CTTCCATGTG
  TCTCTTTCAG GATTTTCAGT CATGATGCAG CCATGACTTT CCTGCTGTCT TCTGACTCTG
  TGGCTAGTTC TCCTGCTGAC CAGGTCACTT TGTCATAGAT CCATCTTGGG CTCCCATTCC
  TCTCTTTGAA CTGAACTCTC TTTCACTCTG TCTCCTTCCC TTGAAAACAT AATGTGCTCA
  Y
  TTCCAGTATT GACTCTTTGT ACTCCAGACC ATCCATCCCT CCCAGCTTCC CTAACTCAAG
  TCTGCTGGAG AATTAGATGC ATAAACCCTC CCAACTATAC CTTCATACCA CTGTGCCTCT
  CAACATTCTG CCTGGAAACT GATTACTCAT AATAAGAATT TTATCTGGCA AACTTTGGCT
  GGCTTTAACT TCTATCACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983477	NES10785987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30777543					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983477	NES10785987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60326101 () rs orientation: forward

Symbol	Name	Function Class
Gm54175	predicted gene, 54175	within coordinates
Rr577391	regulatory region 577391	46 bp proximal
Rr577392	regulatory region 577392	605 bp proximal