rs30776891 SNP Detail

Summary

• ID
  rs30776891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTACTTT AATTTTTAAA
  AATGATTTGA AATGTAAATC AAGTGCATAA CCATAAAATG TAAAAAATTC TAAGTTTCCT
  TAGAAGAGCA GCTTGCATTT AAAAAACTTA ATAGAGTAAA AAAGAAAACG GAAATAATTC
  ATATTAGTAG TTACGAATCA AACTACTCTG GTTTCATGAG TCAAATTCTA AAATGGCGTA
  Y
  GTAAGTCCTA AAAAAAAAGA ATCATCCAAT TTGGACAAGT CTGAGAGGCT GACTGTCCAC
  ATTAACTATA TTTAACTGTA TATTCAAATA TAGAAACTTA ACAGTCTTTC TTTGCAGCAG
  TCTATGGTTT CTTTGAGTTT TCTAAAATTA TTCCACCACA CTGAAGTTAA CAAACATAAT
  TTTAGAAAGA ACAATGGCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983753	NES10785500	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30776891					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983753	NES10785500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381303 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1433 bp downstream
Rr577397	regulatory region 577397	793 bp distal
Rr577398	regulatory region 577398	402 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1676 bp downstream
Tssr29249	transcription start site region 29249	1649 bp downstream
Tssr29250	transcription start site region 29250	1274 bp downstream
Tssr29251	transcription start site region 29251	1216 bp downstream
Tssr29252	transcription start site region 29252	1195 bp downstream
Tssr29253	transcription start site region 29253	1141 bp downstream
Tssr29254	transcription start site region 29254	1096 bp downstream
Tssr29255	transcription start site region 29255	1076 bp downstream
Tssr29256	transcription start site region 29256	1066 bp downstream
Tssr29257	transcription start site region 29257	1045 bp downstream
Tssr29258	transcription start site region 29258	799 bp downstream
Tssr29259	transcription start site region 29259	754 bp downstream
Tssr29260	transcription start site region 29260	1527 bp upstream