rs30776889 SNP Detail

Summary

• ID
  rs30776889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60381204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACATTTT TTCCTTAAAA
  ATTCTATTTT TTTACATACC ATAAAAATGA TGTTATTTAA CATGTAGCAT TTGGGATTAT
  TGTTTCATTT CATTACATTA TGGTACTTTA ATTTTTAAAA ATGATTTGAA ATGTAAATCA
  AGTGCATAAC CATAAAATGT AAAAAATTCT AAGTTTCCTT AGAAGAGCAG CTTGCATTTA
  W
  AAAACTTAAT AGAGTAAAAA AGAAAACGGA AATAATTCAT ATTAGTAGTT ACGAATCAAA
  CTACTCTGGT TTCATGAGTC AAATTCTAAA ATGGCGTATG TAAGTCCTAA AAAAAAAGAA
  TCATCCAATT TGGACAAGTC TGAGAGGCTG ACTGTCCACA TTAACTATAT TTAACTGTAT
  ATTCAAATAT AGAAACTTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46983751	NES10785499	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30776889					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983751	NES10785499	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60381204 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	1334 bp downstream
Rr577397	regulatory region 577397	694 bp distal
Rr577398	regulatory region 577398	303 bp distal
Rr577399	regulatory region 577399	within coordinates
Tssr29248	transcription start site region 29248	1577 bp downstream
Tssr29249	transcription start site region 29249	1550 bp downstream
Tssr29250	transcription start site region 29250	1175 bp downstream
Tssr29251	transcription start site region 29251	1117 bp downstream
Tssr29252	transcription start site region 29252	1096 bp downstream
Tssr29253	transcription start site region 29253	1042 bp downstream
Tssr29254	transcription start site region 29254	997 bp downstream
Tssr29255	transcription start site region 29255	977 bp downstream
Tssr29256	transcription start site region 29256	967 bp downstream
Tssr29257	transcription start site region 29257	946 bp downstream
Tssr29258	transcription start site region 29258	700 bp downstream
Tssr29259	transcription start site region 29259	655 bp downstream
Tssr29260	transcription start site region 29260	1626 bp upstream