rs30776886 SNP Detail

Summary

• ID
  rs30776886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60380820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAGTTT ATTATTCGTA
  GTCCTGTTGC TTTGTCAATA ATATAATGAT ATGGATGCTG CCCAAATTAC AAAGTAGCCT
  GTGGAAGCCT CTCATGTAAA TAGTAAATTT TTTTAAATGA CAAAAGTTTA ACTGGTTTTA
  ACCTCACATT TAAGCTTTTA ATAAGCTGCA AACAAAATTA AGTTCTTTTT GATCTGAAAG
  Y
  TACGTTAGCT GCAAAATAAA ATTCTGTCTT CCTTATTTGT AGGTAACCCT CCACACAGCT
  AACTCTAGTA TAAACATTTG TGTTATTTAT AAATTTGAAT GTTTATATTT TCCTCCTACA
  AGTTGATTTC TGACATTCAT AAATCCTCTC ACGTCTCTTT TATTCTTTTT ATGTTTTATT
  TATTGAACAT TTTTTCCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983747	NES10785497	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30776886					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983747	NES10785497	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60380820 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	Intron
Rr397689	regulatory region 397689	950 bp downstream
Rr577397	regulatory region 577397	310 bp distal
Rr577398	regulatory region 577398	within coordinates
Rr577399	regulatory region 577399	200 bp proximal
Tssr29248	transcription start site region 29248	1193 bp downstream
Tssr29249	transcription start site region 29249	1166 bp downstream
Tssr29250	transcription start site region 29250	791 bp downstream
Tssr29251	transcription start site region 29251	733 bp downstream
Tssr29252	transcription start site region 29252	712 bp downstream
Tssr29253	transcription start site region 29253	658 bp downstream
Tssr29254	transcription start site region 29254	613 bp downstream
Tssr29255	transcription start site region 29255	593 bp downstream
Tssr29256	transcription start site region 29256	583 bp downstream
Tssr29257	transcription start site region 29257	562 bp downstream
Tssr29258	transcription start site region 29258	316 bp downstream
Tssr29259	transcription start site region 29259	271 bp downstream