rs30776884 SNP Detail

Summary

• ID
  rs30776884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60380469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTTTA CACCTCAATA
  GCAGGTCTTC TCTAAACGTA AGTAAATATG TACATGCATT AATTATATAT GAAGAGATGC
  ACAAACTATA GCTCAGTCTC CAAGATTATG AGGGCCTTGT GAATCATTTG TCTTCTTTGT
  AGGATTTATA AAGCATAATG ACTGGTATTT TGCAACTTCC TCTTTTTGTG CACTATCCTT
  Y
  TGCAGAGCAA AGCCTCTATG TATTTGCCAC TTGTAAAGAG AGTCTAGCAG GAAACAGAAC
  TGTCTGAGGT GGTCGTTCAT CAGCAACGGA GCAGATAGAC AGGCAGCTAT AAACAGGGCC
  CAGAGGTAAG AAAAATGTGC CTTTTGTTAC TTTTCAGTTT ATTATTCGTA GTCCTGTTGC
  TTTGTCAATA ATATAATGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983745	NES10785496	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30776884					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983745	NES10785496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60380469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				mRNA-UTR
				Splice-Site
Rr397689	regulatory region 397689			599 bp downstream
Rr577397	regulatory region 577397			within coordinates
Rr577398	regulatory region 577398			42 bp proximal
Rr577399	regulatory region 577399			551 bp proximal
Tssr29248	transcription start site region 29248			842 bp downstream
Tssr29249	transcription start site region 29249			815 bp downstream
Tssr29250	transcription start site region 29250			440 bp downstream
Tssr29251	transcription start site region 29251			382 bp downstream
Tssr29252	transcription start site region 29252			361 bp downstream
Tssr29253	transcription start site region 29253			307 bp downstream
Tssr29254	transcription start site region 29254			262 bp downstream
Tssr29255	transcription start site region 29255			242 bp downstream
Tssr29256	transcription start site region 29256			232 bp downstream
Tssr29257	transcription start site region 29257			211 bp downstream
Tssr29258	transcription start site region 29258			14 bp upstream
Tssr29259	transcription start site region 29259			50 bp upstream