rs30775872 SNP Detail

Summary

• ID
  rs30775872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:60378926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTTGGG TTTATTACTG
  TTTGTATCTT TTGTTTTTGT TTTCTTTGTG TGATATTTCA CGACAGGAAA GGGTCTTAGT
  TTGTTTCAGT TATTTTACTT CTTGTCAATT TATGTTAAAT GTATGTGTAA TAAGATGAAA
  AATATTTCCA TTTTTAGTGA TTCACCCATG CATCTGTCCA TTGACTACAC CATTAAATAC
  R
  AAGCTTGGGG TATGGAATTA AGACCTCTGG GGATTTTTCT CCTTCTGTGT TAGCATATTT
  ATTATTGTCT TTGTTCTATT CATGCTTGGG CAAATTATGG TGGTGAGGCT TCATGGGTGT
  AGCTTCTGAC ATTCCCAAGA GATAGCGTCT CAGCAAACTC CCTGGTTTTC TGTCTTACTA
  TCTTTATGGC TCTTTGGAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46983743	NES10785514	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30775872					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46983743	NES10785514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60378926 () rs orientation: forward

Symbol	Name	Function Class
Mbnl1	muscleblind like splicing regulator 1	1325 bp upstream
Rr397689	regulatory region 397689	643 bp upstream
Rr577394	regulatory region 577394	1738 bp distal
Rr577397	regulatory region 577397	1084 bp proximal
Rr577398	regulatory region 577398	1585 bp proximal
Tssr29248	transcription start site region 29248	693 bp upstream
Tssr29249	transcription start site region 29249	715 bp upstream
Tssr29250	transcription start site region 29250	1089 bp upstream
Tssr29251	transcription start site region 29251	1126 bp upstream
Tssr29252	transcription start site region 29252	1175 bp upstream
Tssr29253	transcription start site region 29253	1226 bp upstream
Tssr29254	transcription start site region 29254	1278 bp upstream
Tssr29255	transcription start site region 29255	1287 bp upstream
Tssr29256	transcription start site region 29256	1302 bp upstream
Tssr29257	transcription start site region 29257	1317 bp upstream
Tssr29258	transcription start site region 29258	1557 bp upstream
Tssr29259	transcription start site region 29259	1593 bp upstream