rs30774358 SNP Detail

Summary

• ID
  rs30774358
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133291136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTGGT CACTTTTCTG
  AGTCTAGTGC TTTGCTCATT GGTGACAAAT TCCACTCAGC AATAACTCCG ATGTCACAAG
  CATGTTCCAG AGTGAAACGG CAGTTCTCCC TTGAGGGTGT GACTTGCATT TCATCACTCT
  GATTTTCTTT GCTTTGGGTA GGTTTTAACT GAAATGCACA TTTTTCCAAT GAGAATTGGA
  S
  TAGTACTGGT ATTTTAAAAA TTGATTTTAA AAGTTATTTT ATCTGTATGG GTGTGTTACC
  TGCATGTATG TCTATGTACC ACATGGGTAC CTGTTGTCTG TAAAGTGCCA AGACAAGAAG
  AAAGTGTCAG ATCTCATGCA ACTGGAATTA GAGATGGCTG AGAGCTATTG GGTGGGTGCT
  GGGAAATGAA CCTGGATCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982611	NES10881765	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30774358					SNP	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982611	NES10881765	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133291136 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr585576	regulatory region 585576	1789 bp distal
Rr585577	regulatory region 585577	303 bp distal
Rr585578	regulatory region 585578	742 bp proximal