rs30773008 SNP Detail

Summary

• ID
  rs30773008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133223273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCCTGG AACTTACTAT
  GCGGGTCAGG CTTGCCTTGA TCGCCCTTCT TCAGCCTCCT GAGTACTGGG ATTCCCAACA
  TAAGCCACCA TGTCCAGGGA CAAAGTCATC CTTGGCCAGT ACTTGGATCC ATGGCTAGCC
  AAAGTCATGA AGGCTCCACA TTCCGCCCGT TGGGTCTGGC CCTTCTGAGC GGCCCAGCAT
  R
  GCCTGTTTCC TTCCTCTGCA GATGCTGTCT CTGCCTGCTG GGATCCTCCA GGTCTAAATA
  GGGTCAGAGT AGAGTACACT GCCCAGCAGG TTACTGACCT CAGCAGGGTG TGTCCACAAA
  ATGGCTCTCC CCTTCCACAC ACACCCAGAG CTAGCAAATG ACCTCAGCTG CCCAGTTCTC
  AGAAGAAAAC GCTATTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46982309	NES10884226	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30773008					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982309	NES10884226	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133223273 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	989 bp distal
Rr585557	regulatory region 585557	within coordinates
Rr585558	regulatory region 585558	1352 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron
Tssr35763	transcription start site region 35763	1260 bp downstream