rs30772952 SNP Detail

Summary

• ID
  rs30772952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133290188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTTCTGT CTCAATTAGT
  TGACAGTAAC ATCAAGCATT CTAGAAATTT ATTGGTCCTT AAACACCACA TATATCATTA
  AGCAATAATG ATATATAAAT ATATATACAC ACACACATAC ACACACACAC ACACACACAT
  ATATATATAT ATATATATAT AACCACAGTG CTGTTATTAT TCTTAGAAAC TGTAGCAATG
  Y
  GGTATCTATA ACTCATGCCC AGATTTCCCC AATTCTTCCC AAATTACAAA ATTATTACAG
  TCCGGGGTTC CAGCAAGGCC TGTGCATTTG TTCATTTGAG GTTTCTTTAA CAGAGATCAG
  CTTTCACAGC CTTGTCATGC TGTTCATGAC ACATATTTTG ATATCTCTGG GCTCTAGCTT
  ACCCTTCTTG GTTTTTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982595	NES10881795	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30772952					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982595	NES10881795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133290188 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr398036	regulatory region 398036	1212 bp downstream
Rr585576	regulatory region 585576	841 bp distal
Rr585577	regulatory region 585577	624 bp proximal
Rr585578	regulatory region 585578	1690 bp proximal