rs30772948 SNP Detail

Summary

• ID
  rs30772948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133289942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCCCCCGA GCTAGTGTTA
  CAGGTGGTTA GAATACCTGA CATAGTTGCT GGGAACCAAA CTCTCAGGTC TCCTGGAAGA
  GTAGAAACAA CTACCAGGTA ATCCTTGCAG CCCTACAACT TTAGTTTTAA AATTTCAAAC
  TTACAGATAA ATGCCAAGAC TAATACAACA TTGCTTATGA ATTTATATCA CTAACATCAT
  Y
  AATTATCAAT ATTTGGATTG ACCCACTTTG TCTTTTATTA CAATATGATT TCTGTCTCAA
  TTAGTTGACA GTAACATCAA GCATTCTAGA AATTTATTGG TCCTTAAACA CCACATATAT
  CATTAAGCAA TAATGATATA TAAATATATA TACACACACA CATACACACA CACACACACA
  CACATATATA TATATATATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982591	NES10881849	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30772948					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982591	NES10881849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133289942 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr398036	regulatory region 398036	966 bp downstream
Rr585576	regulatory region 585576	595 bp distal
Rr585577	regulatory region 585577	870 bp proximal
Rr585578	regulatory region 585578	1936 bp proximal