rs30772944 SNP Detail

Summary

• ID
  rs30772944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133289625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCGAGGAAC TCACGATCCT TCAGTGTCAC TGTTCTGAGT
  GCTGGGCCTT CACACTTCCT CGTGAGAGGT TTCACTTTGG GAAAAATTAT TCAGCTTTTT
  W
  AAAAAGTATT TTTATGTGGT GTGTGTGTGT CTCTGTGTGT GTGTGTGTGT GTGTGAATGC
  ATGTCACATG TGTGGAAGTG TCAGAAGAGC CCAGAAGAAG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ
ss46982587	NES10881878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ
rs30772944					SNP	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982587	NES10881878	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133289625 () rs orientation: forward

Symbol	Name	Function Class
Gm42567	predicted gene 42567	within coordinates
Rr398036	regulatory region 398036	649 bp downstream
Rr585575	regulatory region 585575	1974 bp distal
Rr585576	regulatory region 585576	278 bp distal
Rr585577	regulatory region 585577	1187 bp proximal