rs30772240 SNP Detail

Summary

• ID
  rs30772240
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133222380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCCCAA ACAATGTCTC
  AGCACACAAC TTACACGGCT AACAACGGAA CTACTAGCAA CTGTATTCTA TAACGTGCAA
  TTGTTCTGAA ACTAATGTAG TTCCTAGACA GATTTTTCTC CTTGAATTGA AATCTACTCT
  AATTTTATTC TTATTAGTTA TTCGCTGTTT TAAAAACAGA TTTTCTAGGA GATAAAATTT
  W
  AAATAAGTTA AAAAGCTATG ATCAAACCAG CGTTTTAAAA CAGATTTTCT GCTATATTTT
  CTAAAAGGTA AAATTAAAAT AGTAAATTAA AAAGCTATGA TCTACTGAAG GCCTTTGGAC
  TCATTTAGGT TCAACACAGT GTCTCCTGTA GGTAGGTGGC AGAGTCCCAG AGCCTCTACT
  AGGATCAACC ATGTTATTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
ss46982301	NES10884309	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		T	A
ss135918691	ENSMUSSNP5381776	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MSM/Ms	NOD/ShiLtJ	PWD/PhJ
rs30772240					SNP	T	T	T	T	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982301	NES10884309	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133222380 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	96 bp distal
Rr585557	regulatory region 585557	863 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron