rs30772236 SNP Detail

Summary

• ID
  rs30772236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133221837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCATG CTTGCCTGGA
  TCCTGCCATG CTCCCACCTT GGTGATAATG GGTTGAACCC TGAACCTGTA AGCAGTCCCA
  ATTAAATGTT GTCCTTATAA GAGTTGCCAT GGTCATGGTG TCTGTTCACA GCAGTAAAAC
  CCTAACTAAG ACAGATTAAA AGAGGGTCAT TGTCATTTCC TGACACACTT ACTTGAGATC
  W
  CTCCAGCTGA GTTCAGCCAC TTACAGACAG AACACGAAAG AAGGCAAGGG GGATTCTGCC
  TTCTTGTTTT TTTGTTTAAA ATTTAAAATA GTAAAACTAT ACTAAATATT ACCAGGCCTC
  CAATTGTAAA CTTCTTGAGG TGGAATACTT CTTTGTACAC CATGGGGCTC TGGTGCCCTC
  TACTCTCAGA TGGACGGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982297	NES10884306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30772236					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982297	NES10884306	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133221837 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	108 bp proximal
Rr585557	regulatory region 585557	1406 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron