rs30771708 SNP Detail

Summary

• ID
  rs30771708
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133220348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCAAGT AGGTTCCATA
  CAGTTCCACT GGCGTCCTTA TTTTATCTGT TGGGCTCAGT GCCCGAAGAC TGGGCTGTCA
  GAGCAGCATC TCGGTGCTAG GATGAGCCCT TCACCCGGAC TCTGATCTGA AGTCTCTGGT
  AGGACTTTGT CCCCAATGAT TCTATGGAAG GCAGAGTTGA AGACCAGTCA TTTAAGCCTT
  R
  GTAATTACTG AATGGAGCGC GAGGTTAACT CTGTATACAC CATGAGACGG CAGTGTGCGG
  CTGCTAAGGA AAGAAGGCCT GGTGGTCCCT CTGCTCTGAA GCGTTCATTT TCTCTAATAC
  TCATTTTCAA ATAAAGATTT GGATTTATTT ATCTTATGTA TATAAGTACA CTGCAGCTGT
  ACAGATGGTT CTGAGCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46982289	NES10884445	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30771708					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982289	NES10884445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133220348 () rs orientation: forward

Symbol	Name	Function Class
Rr585556	regulatory region 585556	1597 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron