rs30771569 SNP Detail

Summary

• ID
  rs30771569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:19799557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTG GCTTAACTGA GTGAGGCCTT
  Y
  GCTTCAAGGG TCTATCATAT GGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46442058	mCV22831868	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss139192880	ENSMUSSNP5055975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss324563987	CHEV_14_20568711	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30771569					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19799557 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	1050 bp downstream
Nid2	nidogen 2	1776 bp upstream
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	598 bp proximal
Rr488150	regulatory region 488150	625 bp proximal
Rr488151	regulatory region 488151	1647 bp proximal
Tssr124369	transcription start site region 124369	1414 bp upstream
Tssr124370	transcription start site region 124370	1448 bp upstream
Tssr124371	transcription start site region 124371	1472 bp upstream
Tssr124372	transcription start site region 124372	1787 bp upstream
Tssr127556	transcription start site region 127556	1635 bp downstream