rs30771335 SNP Detail

Summary

• ID
  rs30771335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133231859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGCACC ACTGTGGTTC
  AAAGTTACTT CAGCCAGTTG GGTAAAACTG GATTTCTTGA GTGGTCTGCA GCTGGGTAGT
  TCTCTTCCTT CAGGTTAGGG TTAGACTAGA ATCTGCTACA ATTCCAGAAA TTGCTAAAAT
  CCCAGCAGTG GGCAGGACAG GGCGTGGGAG CTCAGTGAGT TTGAGTATAG CCAGATCCAC
  R
  TAGGGAAGCC TGGTATAAGA AAGGGAAAAA GCCAGAATGT AGGTTTTATT CCACAGTTCC
  TTAAAGCCAG GCCTTAAATT CCTAATGGAA TTCTCTGGCA TATTTCAAAA GCATTTCTTT
  TCCTGCCTTG CCAGGAAGTG TGTGGTGATG GGCTACACTA CCAACTTTGA GGAACTGGGA
  GAGCTGGTGG CAGAGGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982369	NES10883826	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30771335					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982369	NES10883826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133231859 () rs orientation: forward

Symbol	Name	Function Class
Rr375761	regulatory region 375761	561 bp downstream
Rr585559	regulatory region 585559	1435 bp distal
Rr585560	regulatory region 585560	635 bp distal
Tet2	tet methylcytosine dioxygenase 2	Intron