rs30770872 SNP Detail

Summary

• ID
  rs30770872
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133220121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTATAC CAGCCTAGAG
  AAGACAGAGT TTGCAAATAA GATCAGGGCA TCTATACTTA TTCCTAAAGG TACACTCTGC
  TGTTCTAATT ACATGGCTGA GTGTTTAAAA AAAAATTAAG GTTAAAACAT TTTTGTCAAA
  GCAGTAACAC CTTCAAATGT CCCAATAAAA ATCCCGTCTG TGTGGAGCAC TTTGCGACAC
  R
  CAAGAACCAA CAAGTCAATC CTGGCGATGG TCAAGTAGGT TCCATACAGT TCCACTGGCG
  TCCTTATTTT ATCTGTTGGG CTCAGTGCCC GAAGACTGGG CTGTCAGAGC AGCATCTCGG
  TGCTAGGATG AGCCCTTCAC CCGGACTCTG ATCTGAAGTC TCTGGTAGGA CTTTGTCCCC
  AATGATTCTA TGGAAGGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982283	NES10884439	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30770872					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982283	NES10884439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133220121 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr585556	regulatory region 585556			1824 bp proximal
Tet2	tet methylcytosine dioxygenase 2			Intron
				mRNA-UTR