rs30770333 SNP Detail

Summary

• ID
  rs30770333
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133231828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTTTG TGGGGCTGGG
  TCTTGCATTA TGAACTGCAC CACTGTGGTT CAAAGTTACT TCAGCCAGTT GGGTAAAACT
  GGATTTCTTG AGTGGTCTGC AGCTGGGTAG TTCTCTTCCT TCAGGTTAGG GTTAGACTAG
  AATCTGCTAC AATTCCAGAA ATTGCTAAAA TCCCAGCAGT GGGCAGGACA GGGCGTGGGA
  K
  CTCAGTGAGT TTGAGTATAG CCAGATCCAC GTAGGGAAGC CTGGTATAAG AAAGGGAAAA
  AGCCAGAATG TAGGTTTTAT TCCACAGTTC CTTAAAGCCA GGCCTTAAAT TCCTAATGGA
  ATTCTCTGGC ATATTTCAAA AGCATTTCTT TTCCTGCCTT GCCAGGAAGT GTGTGGTGAT
  GGGCTACACT ACCAACTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982367	NES10883825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30770333					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982367	NES10883825	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133231828 () rs orientation: forward

Symbol	Name	Function Class
Rr375761	regulatory region 375761	530 bp downstream
Rr585559	regulatory region 585559	1404 bp distal
Rr585560	regulatory region 585560	604 bp distal
Tet2	tet methylcytosine dioxygenase 2	Intron