rs30770332 SNP Detail

Summary

• ID
  rs30770332
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133229942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTACAGT GAAGAGTGGG
  GCGGGACAGA GAAGCAGAAA GGACATTCAC TACCTCCAAC CATCATGGGT CAAGGTGGAA
  ACCATCAAAA GTCCTCTCAA AGAATATGAA CTATGACCAA ATGGAGCACT TATGAGCCAT
  ATAAAGACTG ATAGGCATAC ACATACCTTC CCCTTAATGC AAATAATAAA GATACAGGCA
  M
  CGGCTAAAGA TTCCGGTGGC TTCTGACCTT TGGCTAAGGT CAAGTATTGA GACCACTTTA
  GAAAGTAATG CTGAGAAGCT GTTTGTGAGA TGGTCTCTCA TACCAACACT CAAGAAGTTG
  AGGTAGGAGG ATTTTTATAA GCTCAAGGCC AGCCAAAGAA ACAAATCTAA ACAATAAAAT
  AAATAAGCAA ATAGGAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982365	NES10883904	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30770332					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982365	NES10883904	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133229942 () rs orientation: forward

Symbol	Name	Function Class
Rr375761	regulatory region 375761	within coordinates
Rr585559	regulatory region 585559	243 bp proximal
Rr585560	regulatory region 585560	986 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron