rs30770328 SNP Detail

Summary

• ID
  rs30770328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133229494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGTCTG CCCTCGGACA
  GTTCCTCATC TCATTCCCCC TCACCCTTGT CTCCGAGAGG ATGTCCCCAC CTCCACCTGC
  CCCCAATAAT AACTTTTTGA ATGTTCAAAA TCTACTTTTA TTTGATAAAT CTTCCAAGAT
  ACCTGAAAAA AGACCCTGTG CCTCATTGAT TGTCCTTTGG TGAAGGAGTT CTAGCCACCT
  R
  TAGCTTCTGT GTTGCTGAAA CCAATATAAG AGTTGTCTAT AGGGGGCTGG AGAGATGGCT
  CAGAGGTTAA GAGCACTGAC TGCTCTTTCA GAGGTCCAGA GTTCAAATCC CAGCAACCAC
  ATGGTGGCTC ACAACCATCT GTAATGAGAT CTGATGCCCT CTTCTGGTGT GCCTGAAGAC
  AGCTACAGTG TACTTATATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46982361	NES10883929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30770328					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46982361	NES10883929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133229494 () rs orientation: forward

Symbol	Name	Function Class
Rr375761	regulatory region 375761	260 bp upstream
Rr585559	regulatory region 585559	691 bp proximal
Rr585560	regulatory region 585560	1434 bp proximal
Tet2	tet methylcytosine dioxygenase 2	Intron