rs30770135 SNP Detail

Summary

• ID
  rs30770135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739804 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  GAGACCTATC CAAGACTGTC CTTGACTCTC CTTCCTCACC CACTTGAGTG CTATAGTCAC
  AGGGATGTGC GACTGAGCTA GCTAAACACC CACACTTCTT ACTGGGCTTT GAAATTTAGC
  CACAATCGCC CACAGCCTGT GAATGGGCGG AGACTCATCC TCGGAAAAAC TCGGCAGTGG
  GCGGGGTCTT CTCTCGAAGA GCTTCCGGAA TCTTTCGGGC AGAGGCGGAG TCTTCTGCCA
  AGGGCCTTTC AGAAGAGGCG GAGCCTATCT CTCATCAGGA CCAGTCTGAC TGCACCTGCA
  Y
  CCTTAGCTCA GAGCATCCCT GGAGCATCTA AGAGGAAAGC ACAGCTAGCA ACCAGGGATC
  GTACTGCAGG GGCAATCGGC CATGCACCTT CCCCTCCCCT GATCTGGAGG TCTACAGCCG
  CGGCCTCGGT ACTGACCGAG ATTCCCAAAG TTGTCTGACC TCTGCAAAAG TGTTTCTATC
  AACAGCCTCT GATTACAACA TGGCTGAGAT CACAAATATA CGCCCCAGCT TTGGTAAGTA
  GAGCCTGACA AACTAATTTC GGGGCGATCA GTGCCGTTGC AATGCCAGAT AGCTGAGGAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46442633	mCV22843947	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30770135					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739804 () rs orientation: reverse

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	within coordinates
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	405 bp downstream
Rr397779	regulatory region 397779	7 bp upstream
Rr579901	regulatory region 579901	1050 bp distal
Rr579902	regulatory region 579902	22 bp distal
Rr579903	regulatory region 579903	903 bp distal
Rr579904	regulatory region 579904	within coordinates
Tssr34067	transcription start site region 34067	49 bp downstream