rs30765803 SNP Detail

Summary

• ID
  rs30765803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23441075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATAATAT AGTATCAGAA
  GTACTTTATA TCAGTCATGC TTTCTTAAAT CTAACAAATA CTACAACATT GGGGAAACAT
  AAGAAAAATG CATAAGAAAT TTTAATTTTG GAGAGATCTT AAATATATTC TTCGTAATTG
  TTCTTTCATC TTGAACAAAA ATTTACCCTC AATTTTAAAA CACAGTCTCT TAGACAGTTA
  Y
  TAAAATAGAT CTATTACTGT AAATACATCA GGGTTAAGAG TATAAAAAGG AATTCAACCC
  ATGTAGGAAA CTAAACAAAT ACCCAACATT AACAAATAAT TTGCTTTCTG ATTTTTTGAC
  TCTAATTTAA ATTGACATTT TTGCCTCAGA TTTTCATGTT TATACGAGTC TTTGAAAAGT
  CTTTTCACCT CAGTGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45963462	mCV27552239	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		T
ss60871213	NES15986338	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	T		C	T	T	T		T	C		T
ss321768449	CHEV_6_23391076	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30765803					SNP	T	T	C	C	C	C	T	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60871213	NES15986338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23441075 () rs orientation: forward

Symbol	Name	Function Class
Cadps2	Ca2+-dependent activator protein for secretion 2	Intron
Rr627175	regulatory region 627175	674 bp distal