rs30765607 SNP Detail

Summary

• ID
  rs30765607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133090721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGTTCCTTG TTTTCCAATC CTCACCGTCC TCCACCTTTT
  AAAACAGTGC CCTAGCCATG AACGTCGTAA TATCAGTAGC GTCTCTAGAA TGCATAAGCG
  Y
  TCTCCCTAGC ATGCTCACAC ATGCACAGGT GCTCACACAT ATGCATGTAT ATGCAAAGGT
  CCAGGAGCTG TAGACTGTAA GCTGCCTTTT CTGTTTGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45543279	mCV24282641	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss46981558	NES10868417	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	C	T	C	T	T	T	T	C
ss135918262	ENSMUSSNP1416382	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30765607					SNP	C	C	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981558	NES10868417	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133090721 () rs orientation: forward

Symbol	Name	Function Class
Rr585546	regulatory region 585546	210 bp proximal