rs30765605 SNP Detail

Summary

• ID
  rs30765605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133090700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAAGTC ACTTTTCCCT
  CTCTTTCCCA CAATATCAAA TGTCATTCCT CTGATAGCCT CATTTCATTT GCAGAAATAC
  TTAAGAATTC TACTTGAGAA GATTTTAGAG CTCTTGACTC CCGGTTCCTT GTTTTCCAAT
  CCTCACCGTC CTCCACCTTT TAAAACAGTG CCCTAGCCAT GAACGTCGTA ATATCAGTAG
  Y
  GTCTCTAGAA TGCATAAGCG TTCTCCCTAG CATGCTCACA CATGCACAGG TGCTCACACA
  TATGCATGTA TATGCAAAGG TCCAGGAGCT GTAGACTGTA AGCTGCCTTT TCTGTTTGGT
  TTTGGAGACA GGTGTTGTGT AGCCCATGCT AGTCTTGAAT TCACTAAGAG GCTGAGTATG
  ATCTTGAATT TGATTTATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981556	NES10868416	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30765605					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981556	NES10868416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133090700 () rs orientation: forward

Symbol	Name	Function Class
Rr585546	regulatory region 585546	231 bp proximal