rs30764360 SNP Detail

Summary

• ID
  rs30764360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58420669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACTGGG GAAGGCATTA
  TAGAGCAAAG CTAGGTAGTA GTAGAGCTGT AATGAATATT CTTTTAAAAA TTAAAAGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTGCCAAAGT AGTCAAGACA
  GCACACTGTT AGGACAGAAG TGATTGCCAA AGCCACTAAG GCAGACATTC TTGGTTACAT
  Y
  ATAGAAACAG CCTCTCTCAC ATTAAAATAA TCAAGTCTGT GGAAGCGTGT AGCAGATAGA
  AGACACAGGT GCTCTGATTT GAATTGGAAG AGATGGTTTA AAATAGAGTA CCAAGCTATA
  ATGTCTCAGG GACAGAAAAC TTTAAAGACC TTCATTTAGG TTTATTTATC TTATGCATAT
  GAGTGTTTTG CTAGTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981023	NES10793019	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30764360					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981023	NES10793019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58420669 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	1361 bp distal
Rr577241	regulatory region 577241	1441 bp distal
Rr577242	regulatory region 577242	315 bp proximal
Rr577243	regulatory region 577243	417 bp proximal