rs30764358 SNP Detail

Summary

• ID
  rs30764358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58420424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTCTGG ATGTATTGAG
  TCAGAAGGCA AATTAGAGAG GTACTACAGG TATTGCAACC AAAACAGCTA TTAAAGGAGT
  AACCACAGGC ATGTCAGGAG GTTCATGAAG AATTTCAGAA TTTGTTGATA AGAGGGAGCC
  AAGAGTAAAC ATAAGAGCTA AGACGGCACA GGTGCCATTT AAGGAAGGAG TGCCCAGGAA
  Y
  ACCAGCTCTC TTAAGGAACA CGTTTAATAT TTATGGGGGT TAAAGAAGAC TGGGGAAGGC
  ATTATAGAGC AAAGCTAGGT AGTAGTAGAG CTGTAATGAA TATTCTTTTA AAAATTAAAA
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTTTGCCA AAGTAGTCAA
  GACAGCACAC TGTTAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981021	NES10793018	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30764358					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981021	NES10793018	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58420424 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	1116 bp distal
Rr577241	regulatory region 577241	1196 bp distal
Rr577242	regulatory region 577242	560 bp proximal
Rr577243	regulatory region 577243	662 bp proximal