rs30764356 SNP Detail

Summary

• ID
  rs30764356
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58420326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCCTTGT CAGGTGTTGG
  TCTCTGAATC ATAGGCTGGT GTCCAGATTC ATGGATCAGG AGGACGTTGC CCATTAGAGT
  CTGTATAACA TGTTGAACAG TCTTCTGGAT GTATTGAGTC AGAAGGCAAA TTAGAGAGGT
  ACTACAGGTA TTGCAACCAA AACAGCTATT AAAGGAGTAA CCACAGGCAT GTCAGGAGGT
  Y
  CATGAAGAAT TTCAGAATTT GTTGATAAGA GGGAGCCAAG AGTAAACATA AGAGCTAAGA
  CGGCACAGGT GCCATTTAAG GAAGGAGTGC CCAGGAATAC CAGCTCTCTT AAGGAACACG
  TTTAATATTT ATGGGGGTTA AAGAAGACTG GGGAAGGCAT TATAGAGCAA AGCTAGGTAG
  TAGTAGAGCT GTAATGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981019	NES10793017	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30764356					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981019	NES10793017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58420326 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	1018 bp distal
Rr577241	regulatory region 577241	1098 bp distal
Rr577242	regulatory region 577242	658 bp proximal
Rr577243	regulatory region 577243	760 bp proximal