rs30764354 SNP Detail

Summary

• ID
  rs30764354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58420243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTCTCTGA ATCATAGGCT GGTGTCCAGA TTCATGGATC
  AGGAGGACGT TGCCCATTAG AGTCTGTATA ACATGTTGAA CAGTCTTCTG GATGTATTGA
  R
  TCAGAAGGCA AATTAGAGAG GTACTACAGG TATTGCAACC AAAACAGCTA TTAAAGGAGT
  AACCACAGGC ATGTCAGGAG GTTCATGAAG AATTTCAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46981017	NES10793016	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A		G	A	A	G		G
ss135207011	ENSMUSSNP3473061	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss320783111	CHEV_3_58316744	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30764354					SNP	G	G	A	A	A	A	A	A	G	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981017	NES10793016	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58420243 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	935 bp distal
Rr577241	regulatory region 577241	1015 bp distal
Rr577242	regulatory region 577242	741 bp proximal
Rr577243	regulatory region 577243	843 bp proximal