rs30763420 SNP Detail

Summary

• ID
  rs30763420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58420130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAACTCA GGACCTTTGG
  GAGAGCAGTT GGCGCTCTTA ACCGATGAGC CATCTCACCA GCTCAAGGAC TGATTTTATA
  GAAGGAGGGA GGTTGTATAT GAGGAGCCCC ATGGAGTGAC AGGCTTGGAA TTCCAGGCTC
  TGTCTTTTTC TTCTTGGTTA TGGGAAACAG GAATCAGGTG AGGTCTTTCA TCTTGTAGTG
  Y
  CTTGTCAGGT GTTGGTCTCT GAATCATAGG CTGGTGTCCA GATTCATGGA TCAGGAGGAC
  GTTGCCCATT AGAGTCTGTA TAACATGTTG AACAGTCTTC TGGATGTATT GAGTCAGAAG
  GCAAATTAGA GAGGTACTAC AGGTATTGCA ACCAAAACAG CTATTAAAGG AGTAACCACA
  GGCATGTCAG GAGGTTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981013	NES10793014	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30763420					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981013	NES10793014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58420130 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	822 bp distal
Rr577241	regulatory region 577241	902 bp distal
Rr577242	regulatory region 577242	854 bp proximal
Rr577243	regulatory region 577243	956 bp proximal