rs30763418 SNP Detail

Summary

• ID
  rs30763418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58419709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCACCT GCCCAAGATA
  GCGACACCCA CAGTGATAAT AACCCAAAGA TTTGCCTTCC AGGCCAGTCT TACCAAGGCA
  TTCTCTCAAT TAGGTTTTCT TCTTCTCAGA TGACGCTAGC TAGTTTCAAG ATAAAAGAAA
  CCATCCAGGA CAGGGCCTAA GTCTCATAAG GTATTTGTCG GTCAGTTCTT TGTCCTAAGT
  R
  ACAGACTTCA GGAGGGTGTA GTCTGATACT CAAGTGGGAG AAGAAAAGCA GCTGTAATTT
  AACATTCCAG CCTTTTTGTT CATATAGAAG AAAGAGAGAA CTGATTTTTT TAAAATTTAT
  TTATTATATG TGTGTACACT GTAGCTGTCT TCAGAAACAA CAGAAGGGGG CATCAGATTT
  TTGTTACGGA TGGTTGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45563595	mCV25119325	ABI	CRAMUS_MOUSE	f	SNP		A	G				A	G
ss46981011	NES10793025	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G		G	A	G		G	G	A		A
ss135207002	ENSMUSSNP3006588	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss320783108	CHEV_3_58316210	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30763418					SNP	A	A	G	G	G	G	A	G	A	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981011	NES10793025	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58419709 () rs orientation: forward

Symbol	Name	Function Class
Rr577240	regulatory region 577240	401 bp distal
Rr577241	regulatory region 577241	481 bp distal
Rr577242	regulatory region 577242	1275 bp proximal
Rr577243	regulatory region 577243	1377 bp proximal