rs30762592 SNP Detail

Summary

• ID
  rs30762592
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58417718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACATACTG CAAATTACAG AATAAATGGA AAGAATTTCA
  GCATCCCTTG GAGGAGGCTT GACAGACACC TGGGGCATTC ATGAAAATTA CAGGGCATGG
  K
  CCAGGGGTTG GATCTATGGT ATGCTCAGTG CCAGGCTGTA TGTGTCTCCT CAGTACCAAA
  ACATAGTGCT GCATAGGAAA ATATACATTC ATACTAGCT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46981003	NES10793044	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T		T	T		G
ss135206984	ENSMUSSNP2756036	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320783101	CHEV_3_58314219	CHEVERUD	SCREENING_POP	f	SNP							T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30762592					SNP	G	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981003	NES10793044	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58417718 () rs orientation: forward

Symbol	Name	Function Class
Rr577239	regulatory region 577239	1559 bp distal
Rr577240	regulatory region 577240	1264 bp proximal
Rr577241	regulatory region 577241	1489 bp proximal