rs30762232 SNP Detail

Summary

• ID
  rs30762232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119458652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT TTCTGCTGAG TATATTCTCA
  Y
  ATATATATAT ATATATATAT GTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45962826	mCV22763809	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133589820	ENSMUSSNP3062495	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss321928131	CHEV_6_119431709	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30762232					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119458652 () rs orientation: forward

Symbol	Name	Function Class
Fbxl14	F-box and leucine-rich repeat protein 14	mRNA-UTR
Rr637692	regulatory region 637692	1277 bp distal
Rr637693	regulatory region 637693	159 bp proximal
Rr637694	regulatory region 637694	1188 bp proximal
Rr637695	regulatory region 637695	1475 bp proximal
Tssr58505	transcription start site region 58505	1896 bp downstream
Tssr58506	transcription start site region 58506	297 bp downstream
Tssr58507	transcription start site region 58507	203 bp downstream
Tssr58508	transcription start site region 58508	150 bp downstream
Tssr58509	transcription start site region 58509	128 bp downstream
Tssr58510	transcription start site region 58510	247 bp upstream
Tssr62722	transcription start site region 62722	1197 bp upstream
Tssr62723	transcription start site region 62723	111 bp upstream
Wnt5b	wingless-type MMTV integration site family, member 5B	Intron