rs30761553 SNP Detail

Summary

• ID
  rs30761553
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58361501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAGCAA AGAGAGAGGG
  AAAGGGAGAC TTCAAAGGGA AGAAAAGGAA GGAGGAAATG GTGTAATTAT AATCTTAAAT
  AATTTTTAAG TATTTAAATA TATTTAACCT TCAGTTTTGT AAAACTTTAT GTTGATTAGA
  TTTAGTCTTC AATCAGCAAC TTACAGTCTC GTAAATAACT GCATTTCTTA AAAGACAGGC
  R
  AAATGCTTCC TGGGTTTTAA TTAATGTTTT AGTAATAATG CTATTATTAT ATCTCTTTTA
  TTGAGAAATG GTAGGAATAA AGTTGATAAA TAACCTACTG TAAGCAAGCA GCGTATGATT
  TCTGAGGGGT ATAGGACTTA GCTCCTGTCA TGATTGATGA AGAGTCACTT TTACCTGGCT
  TGCAGAAGCT TACGGATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980715	NES10793812	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30761553					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980715	NES10793812	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58361501 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr577227	regulatory region 577227			387 bp proximal
Rr577228	regulatory region 577228			880 bp proximal
Rr577229	regulatory region 577229			1297 bp proximal
Tsc22d2	TSC22 domain family, member 2			Intron
				Noncoding-Transcript-Variant