rs30761401 SNP Detail

Summary

• ID
  rs30761401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58432005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCACA TATCAAGAAA
  GCTTCCGGTT GTTAAGTTTA GAAAAAAGGC AAAGTGAAAT GTTAAATGAA AATCTCAGGA
  ACTGTAGAAT GCGGCAAATA AAAGCATCTG TCTCAATAAC AGCAGCTTGT CTATTAAAGC
  AGCAGGCAGA GCAGGAGGAC AGTCTGTAAT ACATCCATCC GCAGGGGCAA GAGTCTATCA
  Y
  CTTAAAACCA GGCTGTCTTA ATAACTAATC TTACCTGAAA ACACTTGTCT CATACATTAA
  ATATCCCAGC AGGTATGTTT CCTCTACAGA AAATCAATTC TTTGTACTAC CCTTACTTTA
  TATACTTAGT TTTTGACATA GAGACCTTAG GTACTGGTAT CGTTCAGTCC TGTTCTAGTA
  TCCAGATGTT CACGATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ
ss46981085	NES10792797	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ
rs30761401					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981085	NES10792797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58432005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13201	CpG island 13201	468 bp proximal
Eif2a	eukaryotic translation initiation factor 2A	1247 bp upstream
Rr397681	regulatory region 397681	1169 bp upstream
Rr577247	regulatory region 577247	747 bp proximal
Rr577248	regulatory region 577248	1002 bp proximal
Rr577249	regulatory region 577249	1298 bp proximal
Serp1	stress-associated endoplasmic reticulum protein 1	Intron
Tssr886	transcription start site region 886	1148 bp downstream
Tssr29207	transcription start site region 29207	529 bp upstream
Tssr29208	transcription start site region 29208	1231 bp upstream
Tssr29209	transcription start site region 29209	1424 bp upstream
Tssr29210	transcription start site region 29210	1449 bp upstream
Tssr33349	transcription start site region 33349	529 bp downstream
Tssr33350	transcription start site region 33350	1133 bp downstream
Tssr33351	transcription start site region 33351	1158 bp downstream
Tssr33352	transcription start site region 33352	1184 bp downstream
Tssr33353	transcription start site region 33353	1283 bp downstream
Tssr33354	transcription start site region 33354	1309 bp downstream