rs30761399 SNP Detail

Summary

• ID
  rs30761399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58431829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACACATG CACATTTCTT CATTCTCACA CAGCTGAAAT
  TCAATAATCT TTTTGTGTTA CATAAACTGG TTGGCTCTTG GCCACATATC AAGAAAGCTT
  M
  CGGTTGTTAA GTTTAGAAAA AAGGCAAAGT GAAATGTTAA ATGAAAATCT CAGGAACTGT
  AGAATGCGGC AAATAAAAGC ATCTGTCTCA ATAACAGCAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss46981083	NES10792796	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs30761399					SNP	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981083	NES10792796	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58431829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13201	CpG island 13201	644 bp proximal
Eif2a	eukaryotic translation initiation factor 2A	1423 bp upstream
Rr397681	regulatory region 397681	1345 bp upstream
Rr577247	regulatory region 577247	923 bp proximal
Rr577248	regulatory region 577248	1178 bp proximal
Rr577249	regulatory region 577249	1474 bp proximal
Serp1	stress-associated endoplasmic reticulum protein 1	Intron
Tssr886	transcription start site region 886	1324 bp downstream
Tssr29207	transcription start site region 29207	705 bp upstream
Tssr29208	transcription start site region 29208	1407 bp upstream
Tssr29209	transcription start site region 29209	1600 bp upstream
Tssr29210	transcription start site region 29210	1625 bp upstream
Tssr33348	transcription start site region 33348	1979 bp upstream
Tssr33349	transcription start site region 33349	705 bp downstream
Tssr33350	transcription start site region 33350	1309 bp downstream
Tssr33351	transcription start site region 33351	1334 bp downstream
Tssr33352	transcription start site region 33352	1360 bp downstream
Tssr33353	transcription start site region 33353	1459 bp downstream
Tssr33354	transcription start site region 33354	1485 bp downstream