rs30760489 SNP Detail

Summary

• ID
  rs30760489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58320590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGAAAAA ACAAAAAAAA
  AAAAAAAAAA ACCAAAAAGA ATGAACACTT ACAGATTACT CTTCCCCCTT TAACGTGTGG
  CTGAAGAATA CCACCCTAAT AATCAGAAAA GGAAATTTAA TAAGATAATG TAATGTCACG
  ATCAAGCATG TGGTTTTTAT TTTTCTGAAA CTCCTATGGT CAACAATACC CACTGATAAT
  Y
  AATTTTAACA TCAGCATTAA AATAATCTCT TATAAATTCA CATTGGATTA ACAAGCCAAT
  TATTTCTACG TACTGTCTTG AGAAATTACT GAAATTATAG ATTTAGAAAT GAAGCATTCC
  CTCAGCTATC TCGGCCACAA TAACACCAGC ATGTAACACT TATTTTCTTT TTTCTTCTGC
  CCCCCTCAAG AAGCAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980611	NES10794294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30760489					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980611	NES10794294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58320590 () rs orientation: forward

Symbol	Name	Function Class
Gm65073	predicted gene, 65073	within coordinates
Rr577221	regulatory region 577221	1056 bp proximal
Rr577222	regulatory region 577222	1936 bp proximal
Tsc22d2	TSC22 domain family, member 2	1546 bp upstream
Tssr29198	transcription start site region 29198	1529 bp upstream
Tssr29199	transcription start site region 29199	1572 bp upstream
Tssr29200	transcription start site region 29200	1609 bp upstream
Tssr29201	transcription start site region 29201	1644 bp upstream