rs30760016 SNP Detail

Summary

• ID
  rs30760016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC ACCGTTGCCC TGTGCACCTC
  Y
  CTGCCTCACT TCTCGCCACT CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45962888	mCV24757264	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss132976320	ENSMUSSNP750044	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321738443	CHEV_6_8898332	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30760016					SNP	T	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948332 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	within coordinates
Cpgi17156	CpG island 17156	1328 bp proximal
Nxph1	neurexophilin 1	mRNA-UTR
Rr626455	regulatory region 626455	within coordinates
Rr626456	regulatory region 626456	297 bp proximal
Rr626457	regulatory region 626457	854 bp proximal
Tssr54925	transcription start site region 54925	95 bp upstream
Tssr54926	transcription start site region 54926	238 bp upstream
Tssr54927	transcription start site region 54927	276 bp upstream
Tssr54928	transcription start site region 54928	583 bp upstream
Tssr54929	transcription start site region 54929	619 bp upstream
Tssr54930	transcription start site region 54930	720 bp upstream
Tssr54931	transcription start site region 54931	1338 bp upstream
Tssr54932	transcription start site region 54932	1480 bp upstream