rs30759981 SNP Detail

Summary

• ID
  rs30759981
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:125220016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAGAGA ATATTGCCCT
  CTTGTGTTGA GAGATTTAGG AGACCCCAAG ATTGTTTAGT AATAAACACA GATTTTAAAA
  ATAAAATTCG TACTTTGTTC TTCAAAGAAA TATTACTTAT CAATAGTCAA CCCATTGTTT
  GCAGATGCTG CTAAAACAAA TTTCCAACCT TCTTTTATGG AACACTTATA TGACATATTG
  W
  TTGGACTGCA GATGATTCTT TCATTTTAAT AATTTGCCTA TTATTTTAAG GGTATCATTT
  ATTTCCATCA CTGTATTGTG TAATATATAG CTCCAGTAAA GATAATGTAC TTAGAGTATG
  TTACATTCTA TATGTTTATA AATACATTGA TTTTATTACC AAAATGGATT TCTTTCTGAC
  TTATTAAAAA TGCAAGAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45463876	mCV22728858	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	A
ss135808277	ENSMUSSNP2033866	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		A
ss320936341	CHEV_3_125129285	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30759981					SNP	A	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:125220016 () rs orientation: forward

Symbol	Name	Function Class
Ndst4	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	Intron
Rr584610	regulatory region 584610	169 bp distal