rs30759788 SNP Detail

Summary

• ID
  rs30759788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90568345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATATAAC ATTGAGTTCT
  ATTTTGTTAT CTTTTATCAT GGTGGATGCA TACCATTCCC TCTTACAAAA GAGACTTATT
  GGACAGTGGA TAAGGGCTTG TGAGGAACAG AGGAAAGAGG ATTAGATATA TTGTTGGGGA
  GATTGATGGA GGGCAGGATG GAGAATGTAG ATACGACCTT AGCTGGGTAG TTAAAATAAG
  R
  AAGTTGTCAG GACAGAGGCA TTCCAAGCTG TGGAGGAAAT AGACGTTGTC ACATCCCATC
  TTAAGGCACC TCTATTCCAG TGTCTCATGG AGGGCCTCTG TACAATGGGG TCTGTAATGC
  ATGTACCTCA TAGGATTGAG AGTTAAGAGG GTTTATGTAA GTAAAGCATT GGGGAAGTCC
  TCACAATGGT ACACACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45464114	mCV24984116	ABI	CRAMUS_MOUSE	f	SNP	G	A					A		A
ss60424102	NES15930457	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A		A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30759788					SNP	G	A	A	A	G	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424102	NES15930457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90568345 () rs orientation: forward

Symbol	Name	Function Class
Tssr946	transcription start site region 946	1048 bp downstream
Tssr30264	transcription start site region 30264	1378 bp downstream
Tssr34247	transcription start site region 34247	1602 bp upstream
Tssr34248	transcription start site region 34248	1590 bp upstream