rs30759528 SNP Detail

Summary

• ID
  rs30759528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17464697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTTCCTT GTTCCTAGTC
  TTGCTTTATC TGCCTTGAGG GAGCGCGCGA GGAGGGGGTG GGGGTGTCTT TCTCAAGGGC
  AGGTGTTTCT GGGATGGTCT GAATTTTTTA TTCCTGGCAA ACACACGGAG GGTGTGATCC
  ATCATTTTCT ATCCCACTTT ATCTTTTTTT TTTCCTGGGA CTCAGTGGAG GTGAAATACA
  Y
  TATAACCAGA GGTCAGGTAG TCTGGCTAGT AGCGGTGTAA TTATTAAAAG ACCAAAGAAA
  GTACAATGCA GAATTTATTC CAAACTGTGG TTTCCCATTT CCTACCTTTT TATGTTTAGA
  AGAGCCATTT GCTAATTTGG CAGTTGGCAG GGGTTCTAGG GGCTCACGCA TGAATGCTCG
  TCCAGTGGCT TTTCCCTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45962057	mCV23977715	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss133015005	ENSMUSSNP2227324	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30759528					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17464697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	204 bp distal
Met	met proto-oncogene	Intron
Rr626799	regulatory region 626799	650 bp distal
Rr626800	regulatory region 626800	1203 bp distal
Rr626801	regulatory region 626801	1160 bp distal
Rr626802	regulatory region 626802	within coordinates
Tssr55050	transcription start site region 55050	1256 bp downstream
Tssr55051	transcription start site region 55051	1117 bp downstream
Tssr55052	transcription start site region 55052	889 bp downstream
Tssr55053	transcription start site region 55053	869 bp downstream
Tssr55054	transcription start site region 55054	800 bp downstream
Tssr55055	transcription start site region 55055	792 bp downstream
Tssr55056	transcription start site region 55056	627 bp downstream
Tssr55057	transcription start site region 55057	585 bp downstream
Tssr55058	transcription start site region 55058	549 bp downstream
Tssr55059	transcription start site region 55059	524 bp downstream