rs30759317 SNP Detail

Summary

• ID
  rs30759317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131518993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTT ACCTTGCAGT CTTAAGGACC
  Y
  GGAAGAGGCC TCCACATTAA CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45463455	mCV23622828	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51638639	NES14653906	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	C	C		C		T
ss135905553	ENSMUSSNP6966646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss320967836	CHEV_3_131476196	CHEVERUD	SCREENING_POP	f	SNP													T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30759317					SNP	T	T	C	C	C	C	C	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51638639	NES14653906	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131518993 () rs orientation: forward

Symbol	Name	Function Class
Rr585383	regulatory region 585383	within coordinates
Rr585384	regulatory region 585384	66 bp distal