rs30758959 SNP Detail

Summary

• ID
  rs30758959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58394309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATGCAAC CAAAACATCC
  TAATTTTAAG TGTTCTAATA CATTTTGAAA ACATGAAGTT AAATACTTAA AATCTGATTG
  AATTTAGAAG AAGTGACTAC ACATGTAACA CAGAAATGTA TGGACTCCCT ATTGTTCTGA
  AGAATTAGAA AATGGCACCA CTATTTTTAT AAGTAGGCAA AGAACCTGAA AAGGTATTTC
  W
  CCAAAGACAA ACGGATGGCT GATAGGTTGC TCAGCTAAAC ATTAGACAGT AGTTCTCAAC
  CTTCTTAATT CTGAGACCCT TTAATACACT TCCTCATGTT GTGGTGACTT CCAAACGTAA
  AATTATTTTG TTGGTACTTC ATAATTGTAA TTTTGTTACT GCTATGAATT ATAATGTAAA
  TATCTGATGC GTGGGATATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980865	NES10793415	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30758959					SNP	T	T	T	T	T	A	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980865	NES10793415	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58394309 () rs orientation: forward

Symbol	Name	Function Class
Rr577231	regulatory region 577231	692 bp distal
Rr577232	regulatory region 577232	800 bp distal
Rr577233	regulatory region 577233	440 bp proximal
Rr577234	regulatory region 577234	1300 bp proximal