rs30758957 SNP Detail

Summary

• ID
  rs30758957
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58394234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAGTAAT TAATTCTGTT
  GCCATTTCTT AGTTGTCTCC TTTAAGCAAG TGTACATTAC CTACCTATGG GTAGAGATAT
  GCAACCAAAA CATCCTAATT TTAAGTGTTC TAATACATTT TGAAAACATG AAGTTAAATA
  CTTAAAATCT GATTGAATTT AGAAGAAGTG ACTACACATG TAACACAGAA ATGTATGGAC
  K
  CCCTATTGTT CTGAAGAATT AGAAAATGGC ACCACTATTT TTATAAGTAG GCAAAGAACC
  TGAAAAGGTA TTTCTCCAAA GACAAACGGA TGGCTGATAG GTTGCTCAGC TAAACATTAG
  ACAGTAGTTC TCAACCTTCT TAATTCTGAG ACCCTTTAAT ACACTTCCTC ATGTTGTGGT
  GACTTCCAAA CGTAAAATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980863	NES10793414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30758957					SNP	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980863	NES10793414	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58394234 () rs orientation: forward

Symbol	Name	Function Class
Rr577231	regulatory region 577231	617 bp distal
Rr577232	regulatory region 577232	725 bp distal
Rr577233	regulatory region 577233	515 bp proximal
Rr577234	regulatory region 577234	1375 bp proximal