rs30758653 SNP Detail

Summary

• ID
  rs30758653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58425991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAGAGTC TTTTTCTCAA
  TGTATGAGAT CATAGTGACT AAAGTCACTA TGGTGTGGTT GTAAGGAACA CTTTGTGAAG
  AGGAGCTATC TATTCCAAGG GCTAGAACAG GTATGGGATA CAGCCATAGG GCGTGCAGGG
  GTCTTACACA GAGAAGGACA CATGGGAATC CTTGTGTCCC CCTGTACGAG AAAGACAGAA
  R
  TGGAACAGAG AGCAATTTGA AGACCCCAGA CACAGGCTGG AAATGGCAAA CGTGGTGTCT
  CACTCTTATA ACCAGACTAA CTGGTATGGT GAGGTATACC AGTTGAGGTA TGCCTTTCTT
  TTGATGAAGT GTTCTTTGGG TTTTTTAAAT GTGACCTTTA CTAAAGGATA AATATCACAC
  TGTTGATGTA TCTCCAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981055	NES10792894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30758653					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981055	NES10792894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58425991 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	within coordinates
Rr397679	regulatory region 397679	1712 bp downstream
Rr397680	regulatory region 397680	1012 bp downstream
Rr577245	regulatory region 577245	560 bp distal
Rr577246	regulatory region 577246	382 bp distal
Tssr29205	transcription start site region 29205	1069 bp downstream
Tssr29206	transcription start site region 29206	1024 bp downstream