rs30758649 SNP Detail

Summary

• ID
  rs30758649
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58425576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTGAGCA CTTGGCAATG
  AGGGTGGAGT TTCATGTCAT GCTTAGCAGA AGAAAAAAGT TCTTGCATCA GAAAACATCT
  TAATACTGTT CTCAAACAAG AATGACGGAC TTAAAGCTTT GGACGTGAGT TTCATCCTCT
  GTGGTATATA TGATCCTCTG GGATTAACTG GAAAATTGTG CTCTTGTGGC CAGGGCTGGA
  K
  CGAGAATGCT TTGCTATCTA TCCCTTTATG ATCAGCCTTG GTCAGTTATC ATCCCCAACT
  CAGATCCTGA AGTGTTTGTG CTCTGGGACT TATAGCTGTG TTCCTATTGA CAAAAAACCC
  AACTTGCTGT ACCAGGAGTC TCCAGCACTC TTGGATGCCT GGGGCTAAGT GTGCAGAGCC
  AGGGGCTCTG TTTACCAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981051	NES10792892	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30758649					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981051	NES10792892	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58425576 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	within coordinates
Rr397679	regulatory region 397679	1297 bp downstream
Rr397680	regulatory region 397680	597 bp downstream
Rr577244	regulatory region 577244	1646 bp distal
Rr577245	regulatory region 577245	145 bp distal
Rr577246	regulatory region 577246	within coordinates
Tssr29205	transcription start site region 29205	654 bp downstream
Tssr29206	transcription start site region 29206	609 bp downstream