rs30758645 SNP Detail

Summary

• ID
  rs30758645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58425287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTCACC CCCCATGGGC
  ACTGCAAACA ACAGGTGGTG TCCATACATT CAAGCAAACA AAAACACCCA TACATATAAA
  TAATTTTTAA AAGGAAGCCT AGTCTTTTTC AACTTTTTCC AATGTCAGTT TGCAGACGGG
  GTTTATGGAA GGTCCTGGGA AAACTTAGGC TCAGATTCAG AGGTCCTAGC CAGGGTAGGA
  Y
  ACCCTTTTCA ACAGGCTTCT AGGATACCAA TAATCACAGG CCGCTGTTCT GGGTAGCAGG
  AAACTAGACT AGGTTGGGCA TGGCTTTCAC TGTGAGCACT TGGCAATGAG GGTGGAGTTT
  CATGTCATGC TTAGCAGAAG AAAAAAGTTC TTGCATCAGA AAACATCTTA ATACTGTTCT
  CAAACAAGAA TGACGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981047	NES10792889	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30758645					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981047	NES10792889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58425287 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	134 bp upstream
Rr397679	regulatory region 397679	1008 bp downstream
Rr397680	regulatory region 397680	308 bp downstream
Rr577244	regulatory region 577244	1357 bp distal
Rr577245	regulatory region 577245	within coordinates
Rr577246	regulatory region 577246	145 bp proximal
Tssr29205	transcription start site region 29205	365 bp downstream
Tssr29206	transcription start site region 29206	320 bp downstream